PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G0194
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 363aa    MW: 39691.2 Da    PI: 5.2403
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G0194genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.39.9e-2950144186
     trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rWt+qe+l+Li+++r  e+r+rrg+         + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e++ ++es+s +++ ++l+
  Gh_D01G0194  50 RWTRQEILVLIQGKRVAENRVRRGRaaglafgsgQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWENNIREESESFWVMRNDLR 144
                  8**********************97778888888***************************************************99*9999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.4E-1250140No hitNo description
PROSITE profilePS500906.450116IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.0E-550115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MASEQLSLAA TPDPIDGRKD AVNAAINGVE SRPVSVDCGD DVSKAPRLPR WTRQEILVLI  60
QGKRVAENRV RRGRAAGLAF GSGQVEPKWA SVSSYCKRHG VNRGPVQCRK RWSNLAGDFK  120
KIKEWENNIR EESESFWVMR NDLRRERKLP GFFDKEVYDI LDGAAAVSSA VEIPDSVVAP  180
ALALALTPTP AVQDTAEDNE AVFDSGRSAA AEDGLFSDFE QDDGAGSPEK VELPVSADAG  240
KSVPAPIPIS EQQYQQQPAI PGSKSQGTTK EKHPTSNPEV GSASQEARKR KRTETNGDEE  300
PDNSPQYRLI DVLEKNGKML VAQLEAQNTN FQQERQQRKD HADSLVAVLN KLADALGRIA  360
DKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.28770.0boll| ovule| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452275.10.0PREDICTED: uncharacterized protein LOC105774348
SwissprotQ8VZ201e-120ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A0D2M5T70.0A0A0D2M5T7_G
STRINGPOPTR_0001s13060.11e-158(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65572843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-118Trihelix family protein